Unraveling the efficiency of RAPD and SSR markers in diversity analysis and population structure estimation in common bean

Increase in food production viz-a-viz quality of food is important to feed the growing human population to attain food as well as nutritional security. The availability of diverse germplasm of any crop is an important genetic resource to mine the genes that may assist in attaining food as well as nutritional security. Here we used 15 RAPD and 23 SSR markers to elucidate diversity among 51 common bean genotypes mostly landraces collected from the Himalayan region of Jammu and Kashmir, India. We observed that both the markers are highly polymorphic. The discriminatory power of these markers was determined using various parameters like; percent polymorphism, PIC, resolving power and marker index. 15 RAPDs produced 171 polymorphic bands, while 23 SSRs produced 268 polymorphic bands. SSRs showed a higher PIC value (0.300) compared to RAPDs (0.243). Further the resolving power of SSRs was 5.241 compared to 3.86 for RAPDs. However, RAPDs showed a higher marker index (2.69) compared to SSRs (1.279) that may be attributed to their higher multiplex ratio. The dendrograms generated with hierarchical UPGMA cluster analysis grouped genotypes into two main clusters with various degrees of sub clustering within the cluster. Here we observed that both the marker systems showed comparable accuracy in grouping genotypes of common bean according to their area of cultivation. The model based STRUCTURE analysis using 15 RAPD and 23 SSR markers identified a population with 3 sub-populations which corresponds to distance based groupings. High level of genetic diversity was observed within the population. These findings have further implications in common bean breeding as well as conservation programs.     

Silencing of a lipase maturation factor 2‐like gene by wheat‐mediated RNAi reduces the survivability and reproductive capacity of the grain aphid,Sitobion avenae

Lipase maturation factor (LMF) family proteins are required for the maturation and transport of active lipoprotein lipases. However, the specific roles of LMF2 remain unknown. In this study, a grain aphid lmf2‐like gene fragment was cloned and was highly similar in sequence to a homologous gene in the pea aphid, Acyrthosiphon pisum. An RNAi vector was constructed with this fragment and used for wheat transformation. The expression of the lmf2‐like gene in aphid, as well as the growth and reproduction of the aphids, was analyzed after feeding on the transgenic wheat. There were no significant differences in the expression of the lmf2‐like gene over development. The expression of the lmf2‐like gene was significantly reduced by 27.6% on the fifth day, and 57.6% on the 10th day after feeding. The total number of aphids produced on the transgenic plants was less than the number produced on control plants, and the difference became significant or after 2 weeks. The molting numbers were also reduced in the aphids reared on the transgenic plants. Our findings indicate that lmf2‐like genes may have potential as a target gene for the control of grain aphids and show that feeding aphids with wheat expressing lmf2‐like RNAi resulted in significant reductions in survival and reproduction.     

大鹰鹃鸣声的日节律

鸟类的鸣唱具有吸引配偶和保卫领域的功能,多为雀形目雄性鸟类发出,在其婚配、繁殖中起重要作用。非雀形目鸟类缺乏内鸣肌,发出的声音较为单调。但杜鹃科(Cuculidae)等少数非雀形目鸟类,利用鸣叫来吸引异性和宣示领域,功能上类似雀形目鸟类的鸣唱。鸟类在繁殖期面临觅食等基本生理活动与求偶行为的时间权衡。而鸣唱是雄性鸟类在繁殖期耗能较多的求偶行为,鸣唱的活跃程度受到外界环境和鸟类自身习性的影响。通过研究鸟类鸣声的日节律,有助于了解鸟类对生活史策略的响应。本研究于2016年和2017年鸟类繁殖季在北京小龙门森林公园(40°00′N,115°26′E)进行。2016年和2017年在大鹰鹃(Hierococcyx sparverioides)活动区利用录音机(美国Wildlife Acoustics公司,型号SM4)分别录制了3 d和43 d的录音。通过Kaleidoscope Pro 4.0.3软件(美国Wildlife Acoustics公司),量化录音并提取反应大鹰鹃鸣声特征的参数,进而自动识别出录音中大鹰鹃的鸣声。在优化识别条件后,对大鹰鹃鸣声识别的正确率可以达到60.26%,探测率可以达到44.71%。发现大鹰鹃有两个鸣叫的高峰,一个在3:00时,另一个在19:00时。与同域分布的其他鸟类相比,大鹰鹃鸣声的高峰时段持续的时间更长,且具有夜间鸣叫的特点。结合大鹰鹃的生活史,我们对其鸣声日节律进行了讨论。     

吉林向海自然保护区占用喜鹊巢繁殖的鸟类巢记述

部分鸟类在繁殖过程中,为避免被捕食、减少繁殖投入等而选择占用其他鸟类的巢。2014~2016年每年的4~8月,在吉林向海国家级自然保护区记录到4种占用喜鹊巢进行繁殖的鸟类,其中绿头鸭(Anas platyrhynchos)8巢,纵纹腹小鸮(Athene noctua)4巢,长耳鸮(Aiso otus)5巢,麻雀(Passer montanus)6巢。大部分(82.6%)为利用喜鹊的废弃旧巢,而绿头鸭(1巢)、长耳鸮(2巢)和纵纹腹小鸮(1巢)少数侵占喜鹊当年新建的巢。     

Divergence in style length and pollen size leads to a postmating‐prezygotic reproductive barrier among populations of Silene latifolia

A central tenet of speciation research is the need to identify reproductive isolating barriers. One approach to this line of research is to identify the phenotypes that lead to reproductive isolation. Several studies on flowering plants have shown that differences in style length contribute to reproductive isolation between species, leading us to consider whether style length could act as a reproductive barrier among populations of a single species. This could occur if style length varied sufficiently and pollen size covaried with style length. Populations of Silene latifolia exhibit variation in flower size, including style length, that is negatively correlated with annual precipitation. We show that this divergence in style length has a genetic basis and acts as a reproductive barrier: males from small‐flowered populations produced relatively small pollen grains that were poor at fertilizing ovules when crossed to females from large‐flowered populations, leading to a significant reduction in seed production. Manipulating the distance pollen tubes had to travel revealed that this failure was purely mechanical and not the result of other incompatibilities. These results show that style length acts as a postmating‐prezygotic reproductive barrier and indicate a potential link between ecotypic differentiation and reproductive isolation within a species.     

The point of a Guillemot's egg

The adaptive significance of avian egg shape in birds is poorly understood. The pyriform (pear‐like) shape of the Common Guillemot's Uria aalge egg has long been considered to be an adaptation to prevent eggs rolling off the bare cliff ledges on which this species breeds. Rolling was thought to be prevented either by the egg spinning like a top, which is not the case, or by rolling in an arc, which it does but with little influence on whether the egg will fall from a ledge. We therefore sought alternative explanations for the pyriform shape of the Common Guillemot's egg. This species breeds in extremely dense colonies, which makes their eggs vulnerable to mechanical damage from conspecifics, and to contamination by debris such as faeces and soil. We present evidence consistent with both these possible explanations. First, the pyriform shape of Common Guillemot eggs means that a higher proportion of the eggshell lies in contact with the substrate and this may minimize the effect of impacts. Resistance to impacts may be further enhanced because their eggshells are especially thick where they are in contact with the substrate. Secondly, Common Guillemot eggs are often heavily contaminated with faecal material and other debris during incubation. Most contamination is on the pointed end of the egg where it is in contact with the substrate; the pyriform shape thus keeps the blunt end of the egg, which has the highest porosity, relatively free of contamination, which in turn may facilitate both gas exchange during incubation and the hatching process, because the chick emerges from the blunt end of the egg.     

陕北榆林王阳畔遗址的植硅体分析

榆林地处农牧交错带,是研究环境演变和人地关系的理想地区。本文基于植硅体分析,探讨了该地区王阳畔遗址仰韶晚期至龙山早期过渡阶段的农业生产情况及农业对环境的适应等。遗址剖面及灰坑样品的植硅体分析表明:仰韶晚期,粟和黍是先民的主要粮食作物,而黍较粟始终保持着种植优势;龙山早期,粟作农业逐渐衰落。植硅体组合图谱显示,先民在此遗址活动期间,气候是略偏凉偏干的,整体上较为稳定,呈现出干凉化的趋势。综合来看,农业活动的强弱在一定程度上响应了环境的变化。需要指出的是,该遗址榆科植硅体的大量发现,不仅补充了史前植物利用史,同时也对丰富植硅体数据库具有重要意义。     

Ultrastructure of Pollen Grains from Forced and Unforced Shrubs of Common Lilac

Forcing makes possible to induce plant flowering independently of the season. In lilac, high temperature is the factor that breaks deep dormancy. The deepest dormancy occurs between the end of October and the end of December. Depending on the depth of dormancy, the starting temperatures required for forcing are 37°C in November, 31°C in December, and 25°C in January–March. Under natural conditions, the temperature inducing the inflorescence bud breaking is 6°C, whereas 9°C and 13°C or more allow inflorescence elongation and flowering, respectively (Kronenberg, 1994). In the present work, the effect of high temperature at the beginning of the forcing cycle on the structure of developing pollen grains of common lilac was investigated. Pollen grains from the outdoor-grown (control) shrubs showed no signs of degeneration. They were spherical, three-colpate to colporoidate, and bicellular, and contained large numbers of lipid bodies. High temperatures at the early forcing cycle (November) resulted in the degeneration of most microspores. The first signs of degeneration (cytoplasm plasmolysis) were observed at the tetrad stage and in mature anthers; the microspores consisted only of the outer and inner sporopolenin layers.     

农田周围生态保留带中普通田鼠的种群生态学：种群数量动态及结构

于2003年5月~2004年11月,采用标志重捕法对栖息在生态保留带的普通田鼠种群结构和数量动态进行了跟踪研究。结果表明,两年中种群密度夏季最大分别达到410个体/hm2和641个体/hm2,春季最少分别达到166个体/hm2和153个体/hm2,种群数量从7月份开始增长,8月份种群密度减少并于11月份开始重新增长。种群中雌性个体数量比较多,雌性在种群中的居留时间较长,同时存活率比雄性高,这导致种群数量的季节变化。种群周转率比较高,在两个捕鼠期间种群中的80%个体被更新,这表明普通田鼠在生态保留带中的活动非常频繁,不断与周围的其他种群进行交流,提高了种群对环境的适应能力。种群中雌雄个体的巢区之间没有年间变化,活动巢区比较小,巢区长度2003年平均为11 m,最长为37.5 m,2004年平均为13 m,最长为52 m。Pearson相关指数表明种群数量和生态保留带年龄、覆盖率和高度之间没有相关性。     

中国林蛙蝌蚪和大蟾蜍蝌蚪的最适温度、逃避温度及致死温度

报道了中国林蛙蝌蚪 (Ranachensinensis)和大蟾蜍蝌蚪 (Bufogargarizans)在不同驯化温度下的最适温度、逃避温度和致死温度的研究结果。将中国林蛙蝌蚪和大蟾蜍蝌蚪分别在 5、1 5和 2 5℃ 3个不同温度下驯养 3周 ,利用温度梯度装置观察记录 2种蝌蚪的最适温度、逃避温度和最高致死温度。结果表明 ,经过在 5、1 5和 2 5℃ 3个温度下的驯化 ,中国林蛙蝌蚪的最适温度范围分别为 1 3 . 5～ 1 8℃、2 0. 5～2 5℃和 2 3～ 2 7. 5℃ ;大蟾蜍蝌蚪的最适温度范围分别为 1 2～ 1 6 .5℃、2 1～ 2 5. 5℃和 2 2～ 2 6. 5℃。中国林蛙蝌蚪和大蟾蜍蝌蚪的最高致死温均在 3 7～ 3 8℃之间 ,最低致死温均为 0℃。驯化温度对最适温度影响显著 (P <0 .0 1 ) ,对致死温度则没有显著影响。驯化温度对中国林蛙蝌蚪和大蟾蜍蝌蚪的逃避温度产生的影响比最适温度的大。